Determining the energy gap in a quantum many-body system is critical to understanding its behavior and is important in quantum chemistry and condensed matter physics. The challenge of determining the energy gap requires identifying both the excited and ground states of a system. In this work, we consider preparing the prior distribution and circuits for the eigenspectrum of structured, time-independent Hamiltonians (e.g., local, sparse, or symmetry-constrained), which can benefit both classical and quantum algorithms for solving eigenvalue problems. The proposed algorithm unfolds in three strategic steps: Hamiltonian transformation, parameter representation, and classical clustering. These steps are underpinned by two key insights: the use of quantum circuits to approximate the ground state of transformed Hamiltonians and the analysis of parameter representation to distinguish between eigenvectors. The algorithm is showcased through applications to the 1D Heisenberg system and the LiH molecular system, highlighting its potential for both near-term quantum devices and fault-tolerant quantum devices, restricted to structured Hamiltonians where approximate state preparation is feasible. The paper also explores the scalability of the method and its performance across various settings, setting the stage for more resource-efficient quantum computations that are both accurate and fast. The findings presented here mark a new insight into hybrid algorithms, offering a pathway to overcoming current computational challenges.